Relevant MGOS Links Sitemap

 
Relevant MGOS Links
We welcome suggestions on sites to add to this page.
M.grisea (oryzea) Databases
BROAD Institute - sequenced and annotated M.grisea
RiceBlastDB - at Cornell
MIPS - Pendant/biomax (v5)
JGI IMG - Integreated Microbial Genomes
DFGI Gene Index - former TIGR TCs
NIAS EST DB - 35k + public
MPSS - Massively Parallel Signature Sequence
ATMT - mutant database
COGEME - pathways
NCBI: M. grisea taxonomy and Unigene Statistics
GROMO - Genomic Resources of Magnaporthe oryzae

Fungal Databases

PHI-base - host pathogen interactions
Pathoplant - plant pathogen interactions
FPC- DB - Fungal Protein Cluster Database
FDF - fungal proteins involved in calcium signalling
e-Fungi - data warehouse
COGENE - Phytopathogenic Fungi and Oomycete EST Database
CFPG - comparative fungal genomics platform
USDA ARS Fungal Databases
Resources - for Fungal Comparative Genomes (Stajich)
   Moving from Duke to Berkeley so not totally functional.
DFCI Fungi Gene Indices - former TIGR TCs
Fungal Genomes Central - NCBI
Fungal search - in UniProtKB

Plant-pathogen (eukaryotic) databases
[A] Ascomycota, [B] Basidiomycota, [0] Oomycete

BROAD FGI Databases
[A] Aspergillus - compare 8 species
[A] Fusarium - compare verticillioides, oxysporum, and graminearum
[A] Botrytis Cinerea (wine grapes and others)
[A] Pyrenophora tritici-repentis (helminthosporiosis in wheat)
[A] Sclerotinia sclerotiorum (over 400 plant species)
[A] Stagonospora nodorum (Phaeosphaeria nodorum) (leaf spot disease in wheat)
[B] Puccinia graminis f. sp. tritici (stem rust in wheat, barley, oat, rye)
[B] Ustilago maydis (corn smut disease in maize)
JGI - IMG (Integrated Microbial Genomes)
[A] Ashbya (Eremothecium) gossypii (stigmatomycosis in cotton)
[A] Gibberella zeae PH-1 (headblight in wheat and barley)
[B] Ustilago maydis
Sanger Fungi Databases - [O] phytophthora infestans (potato)
MIPS
[A] Botrytis cinera B05.10
[A] FGDB - Fusarium graminearum
[A] Sclerotinia sclerotiorum
[A] Stagonospora nodorum
[B] MUMDB - Ustilago maydis
[O] Phytophthora ramorum
AGD - Ashbya Genome Database (e!)
Also, S.cerevisiae, S.pombe, N.crassa
VBI Microbial Database [0] -
[O] Phytophthora sojae (soybean)
[O] Phytophthora ramorum (oak)
[O] Phytophthora infestans (potato)
[O] Hyaloperonospora parasitica (oilseed rape, cauliflower)
OGD - Oomycete Genomics Database
VMD - Oomycetes Soybean EST database
Slides & Information
Wiki - definition
Infection-related morphogenesis
Generation of a Saturated Insertion Strain Library of Magnaporthe grisea

PAMGO

PAMGO: Plant-Associated Microbe Gene Ontology
Important! Listing and description of PAMGO terms
Listing of taxon specific gene annotations (including M.grisea)
Annotation of Magnaporthe grisea with Gene Ontology Terms
Eight papers on PAMGO in BMC Microbiology
AMIGO - browse gene onotology
GO evidence codes

Resources

Fungal Genetics Stock Center
Agilent M. grisea 2.0 Oligo Microarray Kit
SignalP server     Probius server

Rice

International Rice Genome Sequencing Project
The TIGR Rice Database
Gramene: A Comparative Mapping Resource for Grains

Useful sites

GOLD
Plant pathogens - fungi
Plant pathogens - protists (Omycetes)
Tree of Life - Fungi
MetaDB - A Metadatabase for the Biological Sciences

Other fungal databases

BROAD FGI Databases
[A] Neurospora crassa
[A] Saccharomyces cerevisiae
[A] Schizosaccharomyces - compare cerevisiae, japonicus, octosporus
MIPS MNCDB - [A] Neurospora
SGD saccharomyces (species of yeast,
- causes food spoilage, used in making wine, bread and beer)
CandidaDB - (yeast, human pathogen)
CGD - Candida Genome Database
TIGR Fungal Databases
[A] Aspergillus fumigatus (opportunistic pathogenic)
[A] Aspergillus clavatus (occassionally pathogenic, allergenic)
[A] Neosartorya fisheri (rare pathogen, spoilage in fruits)
[B] Cryptocococcus neoformans (infection is called cryptococcosis)
AspGD - Aspergillus Genome Database
Phycomyces
GeneDB - A. fumigatus, S. cerevisiae, S. pombe