Downloaded from UniProt taxonomic divisions.
The M. grisea (MG) genes from the MGOS site, and the rice (OS) genes from TIGR
The M. grisea ESTs and rice ESTs generated for the original MGOS project. See descriptions.
The EST Contigs assembled from the above described ESTs using the PAVE program.
The M. grisea genome sequence from
Broad and the rice genome sequence from TIGR that
was sequenced by the IRGSP.
For a better understanding of BLAST you can
refer to the
which explains the basics of the BLAST algorithm.
The following descriptions are copied from
compares an amino acid query sequence against a protein sequence
compares a nucleotide query sequence against a nucleotide sequence
compares a nucleotide query sequence translated in all reading frames
against a protein sequence database
compares a protein query sequence against a nucleotide sequence
database dynamically translated in all reading frames
compares the six-frame translations of a nucleotide query sequence
against the six-frame translations of a nucleotide sequence database.
Please note that tblastx program cannot be used with the nr database
on the BLAST Web page.
Filtering is only applied to the query sequence (or its translation
products), not to database sequences. Default filtering is DUST for
BLASTN, SEG for other programs.
The statistical significance threshold for reporting matches against
database sequences; the default value is 10, such that 10 matches are
expected to be found merely by chance, according to the stochastic
model of Karlin and Altschul (1990). If the statistical significance
ascribed to a match is greater than the EXPECT threshold, the match
will not be reported. Lower EXPECT thresholds are more stringent,
leading to fewer chance matches being reported. Fractional values are
Specify an alternate scoring matrix for BLASTP, BLASTX, TBLASTN and
TBLASTX. The default matrix is BLOSUM62 (Henikoff & Henikoff,
1992). The valid alternative choices include: PAM40, PAM120, PAM250
and IDENTITY. No alternate scoring matrices are available for BLASTN;
specifying the MATRIX directive in BLASTN requests returns an error response.
Whether to allow gapped alignments; either ON or OFF.
The size of the initial word that must be matched between the
database and the query sequence.
Penalty for a mismatch in the BLAST portion of run.
Reward for a match in the BLAST portion of run.
Result Format Options:
Restricts the number of short descriptions of matching sequences
reported to the number specified; default limit is 100 descriptions.
See also EXPECT.
Restricts database sequences to the number specified for which
high-scoring segment pairs (HSPs) are reported; the default limit is
100. If more database sequences than this happen to satisfy the
statistical significance threshold for reporting (see EXPECT below),
only the matches ascribed the greatest statistical significance are